Showing posts with label Aurametrix. Show all posts
Showing posts with label Aurametrix. Show all posts

Monday, May 12, 2025

Predicting Meal Responses: A Storm of Variables

Predicting how our bodies respond to meals—particularly for individuals with conditions like Irritable Bowel Syndrome - is notoriously challenging. Traditional approaches have relied heavily on averages and generalized dietary guidelines, but each individual's unique genetic makeup, gut microbiome, and lifestyle make standardized predictions unreliable. Aurametrix 1.0 was pioneering software designed to personalize predictions based on individual characteristics, acknowledging that our biology makes us distinct. Yet, as recent studies highlight, even this level of personalization might fall short.

A recent exploratory analysis published in the American Journal of Clinical Nutrition underscores the complexity of individual responses to identical meals. Researchers found substantial variability in glucose responses when the same meal was consumed by the same individual on different days. Using continuous glucose monitors (CGMs), the study tracked glucose responses in participants consuming identical meals one week apart under tightly controlled conditions. Remarkably, about 80% of the variation in glucose responses was attributed to intraindividual factors—biological differences, environmental conditions, and even measurement error—rather than the food itself.

This variability wasn't significantly explained by common factors such as carbohydrate content, energy intake, or physical activity alone. The timing of snack intake, water consumption, recent stress levels, sleep quality, and minor changes in meal composition or eating sequence also influence bodily responses significantly. Similar complexities occur in predicting symptom flares in IBS, where digestive responses can vary dramatically based on recent dietary patterns, hydration, psychological stress, and sleep history.

Behavioral and psychological factors, like stress or anxiety, can profoundly impact digestive function and gut sensitivity, causing variability in how someone with IBS responds even to familiar meals. Likewise, hydration status and recent dietary history can modulate the gut's reaction, making precise predictions difficult. Interestingly, while intraindividual variation (iiV) presents a challenge in the general population, individuals with metabolic disease—particularly those with type 1 or type 2 diabetes—tend to exhibit more predictable glycemic responses to meals - particularly when food categories—rather than just macronutrients—are properly structured through more sophisticated algorithms like Hierarchical Information Criterion (as suggested in Aurametrix 1.0 and demonstrated by Shen et al, 2025)

Emerging research further underscores that a person's response to a meal isn't static but rather dynamic, influenced by a complex interplay of factors over days and weeks, not just hours. These findings suggest that true personalized nutrition must account not only for an individual’s static biological markers but also dynamic behavioral and environmental factors, including past dietary habits, hydration levels, stress, sleep patterns, and even subtle daily activity variations.

Thus, while personalized prediction software like Aurametrix's version 1.0 represented a significant leap forward, the next generation of personalized nutrition and IBS management tools must integrate broader and more comprehensive real-time data. Only then can we better anticipate and manage complex, highly individualized bodily responses.


REFERENCES

Hengist A, Ong JA, McNeel K, Guo J, Hall KD. Imprecision nutrition? Intraindividual variability of glucose responses to duplicate presented meals in adults without diabetes. Am J Clin Nutr. 2025 Jan;121(1):74-82. doi: 10.1016/j.ajcnut.2024.10.007. Epub 2024 Dec 2. PMID: 39755436; PMCID: PMC11747189.

Wolever TM. Personalized nutrition by prediction of glycemic responses: garbage in → garbage out. Am J Clin Nutr. 2025 Jan;121(1):1-2. doi: 10.1016/j.ajcnut.2024.11.004. Epub 2024 Dec 2. PMID: 39755431.

Shen Y, Choi E, Kleinberg S. Predicting Postprandial Glycemic Responses With Limited Data in Type 1 and Type 2 Diabetes. J Diabetes Sci Technol. 2025 Mar 5:19322968251321508. doi: 10.1177/19322968251321508. Epub ahead of print. PMID: 40042044; PMCID: PMC11883769.

Sunday, June 9, 2013

Is Your Work Giving you IBS?

All jobs come with health risks. Some risks are obvious in the short-term, others seem very minor but with plenty of negative long-term consequences. Such as weight gain or irritable bowel syndrome.

Most likely to gain weight on the job
Recent CareerBuilder report shows that employees spending long hours behind a desk or experiencing high levels of stress gain weight on the job. Chances to gain weight are 69% for administrative assistants, 56% for engineers including software developers, 51% for teachers and K-12 instructors, 51% for B14 nurse practitioners and physician assistants, 51% for IT managers and network administrators, 46% for attorneys, judges and legal professionals, 45% for operators, assembly line and production workers and 39% for biological, physical and social scientists.


Irritable Bowel Syndrome is also associated with stressful, sedentary and less regular lifestyles. Some studies showed that this common disorder is more prevalent among the unemployed, those with lower income and education. But this could be a consequence rather than the cause. As IBS is more likely to occur in teenagers and singles (or stressed heads of households) under the age of 40. And the younger the person, the more it affects the social functioning, making it more difficult to get higher education, employment and advance career.

Studies all over the world showed that students are among the most vulnerable to IBS populations. The risk of getting it is 30% or higher. High stress, irregular schedules and lousy diets are a way of life for most students. Attending a university or college is a stressful experience, indeed. IBS flareups, however, do not directly correlate with stress per se, rather with the perceived stress. A study that looked at military veterans, for example, found that those who developed IBS had twice higher rates of anxiety and depression than other veterans. Female veterans suffering from posttraumatic stress disorder had 3-9 times higher rate of IBS. Prevalence of IBS in female veterans was about 40%, higher than for students. Rates of IBS among another stressful profession - nursing - are about the same as for students. But rates for rotating shift nurses can be as high as almost 50% - even higher than for military personnel.

So, if you want to avoid IBS, become a dietitian - it's one of the least stressful jobs with fixed hours and opportunities to think about healthy food choices. Or be your own Aurametrix, to find what foods, activities and environmental exposures work best for you - and in what amounts and combinations.

REFERENCES

Kim HI, Jung SA, Choi JY, Kim SE, Jung HK, Shim KN, & Yoo K. (2013) Impact of shiftwork on irritable bowel syndrome and functional dyspepsia. Journal of Korean medical science, 28(3), 431-7. PMID: 23487413

Nojkov B, Rubenstein JH, Chey WD, & Hoogerwerf WA (2010). The impact of rotating shift work on the prevalence of irritable bowel syndrome in nurses. The American journal of gastroenterology, 105 (4), 842-7 PMID: 20160712

Okami, Y. (2013). Irritable bowel syndrome in Chinese nursing and medical school students—Related lifestyle and psychological factors Open Journal of Gastroenterology, 03 (01), 55-63 DOI: 10.4236/ojgas.2013.31009

Jafri W, Yakoob J, Jafri N, Islam M, & Ali QM. (2005) Frequency of irritable bowel syndrome in college students. Journal of Ayub Medical College, Abbottabad : JAMC, 17(4), 9-11. PMID: 16599025

Naeem SS, Siddiqui EU, Kazi AN, Memon AA, Khan ST, & Ahmed B. (2012) Prevalence and factors associated with irritable bowel syndrome among medical students of Karachi, Pakistan: a cross-sectional study. BMC research notes, 255. PMID: 22624886

Alhazmi AH. (2011) Irritable bowel syndrome in secondary school male students in AlJouf Province, north of Saudi Arabia. JPMA. The Journal of the Pakistan Medical Association, 61(11), 1111-5. PMID: 22125990

Dong YY, Zuo XL, Li CQ, Yu YB, Zhao QJ, & Li YQ. (2010) Prevalence of irritable bowel syndrome in Chinese college and university students assessed using Rome III criteria. World journal of gastroenterology : WJG, 16(33), 4221-6. PMID: 20806442

Hazlett-Stevens H, Craske MG, Mayer EA, Chang L, & Naliboff BD. (2003) Prevalence of irritable bowel syndrome among university students: the roles of worry, neuroticism, anxiety sensitivity and visceral anxiety. Journal of psychosomatic research, 55(6), 501-5. PMID: 14642979

Olubuyide IO, Olawuyi F, & Fasanmade AA. (1995) A study of irritable bowel syndrome diagnosed by Manning criteria in an African population. Digestive diseases and sciences, 40(5), 983-5. PMID: 7729288

Jafri W, Yakoob J, Jafri N, Islam M, & Ali QM. (2005) Frequency of irritable bowel syndrome in college students. Journal of Ayub Medical College, Abbottabad : JAMC, 17(4), 9-11. PMID: 16599025

Gulewitsch MD, Enck P, Hautzinger M, & Schlarb AA. (2011) Irritable bowel syndrome symptoms among German students: prevalence, characteristics, and associations to somatic complaints, sleep, quality of life, and childhood abdominal pain. European journal of gastroenterology & hepatology, 23(4), 311-6. PMID: 21399505

Rev Bras Ginecol Obstet. 2013 Feb;35(2):84-9. Irritable bowel syndrome in women with chronic pelvic pain in a Northeast Brazilian city. Lessa LM, Chein MB, da Silva DS, Poli Neto OB, Nogueira AA, Coelho LS, Brito LM.

Clin Gastroenterol Hepatol. 2012 Jul;10(7):712-721.e4. doi: 10.1016/j.cgh.2012.02.029. Epub 2012 Mar 15. Global prevalence of and risk factors for irritable bowel syndrome: a meta-analysis. Lovell RM, Ford AC.

Dig Dis Sci. 2006 Mar;51(3):446-53. Prevalence, sociodemography, and quality of life of older versus younger patients with irritable bowel syndrome: a population-based study. Minocha A, Johnson WD, Abell TL, Wigington WC.

Tuesday, May 14, 2013

Coffee: Bugs and Debugging

Coffee can bug or de-bug you - in many different ways.

It can actually energize your gut bugs. Nestlé researchers showed that for sixteen healthy adult volunteers consuming a daily dose of 3 cups of coffee during 3 weeks. This led to an increase of the metabolic activity and/or numbers of Bifidobacterium species, important probiotics in the food industry. Bifidobacteria has been long suggested to be therapeutic for the relief of intestinal disorders, including Irritable Bowel Syndrome (IBS). These microbes can crowd out the bad bacteria and fight inflammation. Does it mean coffee can alleviate IBS?

Unfortunately, no one was ever able to cure IBS with coffee. And diets lowering the amounts of bifidobacteria (like low FODMAP diet) are actually most beneficial for conditions associated with bacterial imbalance. Even though Bifidobacterium infantis 35624 was shown to help women at a dosage of 1x108 CFU  for 4 weeks (but not 106 or 108 CFU!) with abdominal pain, bloating, gas, diarrhea, constipation and other IBS symptoms. And B. lactis DN-173 010 helped healthy women to reduce transit time when 1010 CFU of these bacteria was taken for 10 days.
RNA-DGGE gels of fecal samples showing abundance
and/or metabolic activity of dominant bacteria
before and after
 coffee consumption
Too much of a good thing can be a problem and it's important to keep even "good" bacteria at bay. How much is too much coffee for IBS sufferers? It depends. And it varies from being able to only smell coffee (which might be enough to protect from stress and cavities) to drinking two cups per day.

Everything is relative. That's why Aurametrix computes tolerance profiles based on many different factors - time of the consumption relative to wake up and bed times, diet an hour, week and month prior to consumption, medications and supplements, activity, gender, medical history, stress levels, the weather and genetics.

General recommendation for healthy people is to limit their coffee intake to about 4 or 3 cups - for men and women respectively.  To prevent insomnia, digestive issues, a racing heart, high blood pressure, nervousness, irritability, nausea, risk of developing glaucoma and other short & long term problems. And it's best to drink coffee in the first half of the day - as caffeine's half life is 5 hours or more, longer with unhealthy diet and medical conditions (it could be up to 7 days for people with alcoholic hepatic disease!). The worse your coffee metabolism is, the less you should drink it. Genetically-slow caffeine metabolizers (individuals homozygous for the  CYP1A2*1A allele in their genes) should actually limit coffee to 1 cup or less, to reduce the risk of myocardial infarction. Rapid caffeine metabolizers with CYP1A2*1F genotype, on the other hand, could reduce their heart failure risk by moderate consumption of coffee. Coffee could help mice avoid skin cancer - but only if they are also vigorously exercising. It can prevent reoccurence of breast cancer - if you already had it and are taking tamoxifen. With the right genes, bacteria, diet, activities and the brain gut axis, moderate amounts of coffee can also decrease risks of type 2 diabetes,  depression, workplace apathy, cognitive decline, gout attacks, respiratory disease, infections, stroke, injuries and accidents.

But these are statistical averages. And you are not average. You are unique and paradoxical in your own wonderful way. Aurametrix was created to help you understand that.

What is your Coffee worth?


REFERENCES

Jaquet M, Rochat I, Moulin J, Cavin C, & Bibiloni R (2009). Impact of coffee consumption on the gut microbiota: a human volunteer study. International journal of food microbiology, 130 (2), 117-21 PMID: 19217682

Cornelis, MC et al., 2006. Coffee, CYP1A2 genotype, and risk of myocardial infarction. J. Amer. Med. Assn. 295(10):1135-1141.

Nehlig A: The neuroprotective effects of cocoa flavanol and its influence on cognitive performance. Br J Clin Pharmacol 2013, 75:716–727.

Lucas M, Mirzaei F, Pan A, Okereke OI, Willett WC, O'Reilly ÉJ, Koenen K, Ascherio A: Coffee, caffeine, and risk of depression among women. Arch Intern Med 2011, 171:1571–1578

Jin JS, Touyama M, Hisada T, Benno Y: Effects of green tea consumption on human fecal microbiota with special reference to Bifidobacterium species. Microbiol Immunol 2012, 56:729–739.

Maria Simonsson, Viktoria Söderlind, Maria Henningson, Maria Hjertberg, Carsten Rose, Christian Ingvar, Helena Jernström. Coffee prevents early events in tamoxifen-treated breast cancer patients and modulates hormone receptor status. Cancer Causes & Control, 2013; 24 (5): 929 DOI: 10.1007/s10552-013-0169-1

Tzounis X, Rodriguez-Mateos A, Vulevic J, Gibson GR, Kwik-Uribe C, Spencer JP: Prebiotic evaluation of cocoa-derived flavanols in healthy humans by using a randomized, controlled, double-blind, crossover intervention study. Am J Clin Nutr 2011, 93:62–72.

Mostofsky E, Rice MS, Levitan EB, Mittleman MA. Habitual coffee consumption and risk of heart failure: a dose-response meta-analysis.  Circ Heart Fail. 2012 Jul 1;5(4):401-5. doi: 10.1161/CIRCHEARTFAILURE.112.967299. Epub 2012 Jun 26.

Gabashvili, I. Why red beans and rice are good.. but not with coffee. Forbes, 4/30/2012

Monday, May 7, 2012

Finding the Goldilocks Solution



A top story in today’s news is related to a recent scientific paper published in Current Biology concerning the dinosaurs. British scientists wanted to know, Could methane produced by sauropod dinosaurs have helped drive Mesozoic climate warmth?  By their estimates, some 520 million tons of methane (a “greenhouse gas” emission) were produced by the flatulent beasts every year.  This begs the question, do flatulent humans today also contribute to global warming?

Probably not enough to be concerned about. Even so, this doesn’t allay the anxieties people have about expulsing gas—anxieties that have more to do with interpersonal relationships in the workplace than with the implications of global warming.

As Dr. Wynne-Jones says in an article on diverticular disease, many bowel-related problems are in fact confined to modern urban communities affecting “the cultured, the refined, the considerate.” Folks go out of their way to avoid beans in their diet for fear of embarrassing themselves in a working environment where everyone is packed together in neighboring cubicles.


Happily, Winham  and  Hutchins discovered that over 50% of people can consume up to ½ cup of beans daily without any adverse effects. But how do you know how much beans to eat on your own?  How do you arrive at the Goldilocks amount—not too much, not too little—that’s just right for you?

Personal health analysis tools like Aurametrix are already making it possible to apply systematic measures to discover for ourselves our individual tolerance levels for a wide variety of foods. As Aurametrix founder Irene Gabashvili remarked in her Forbes article:  “A digital nurse can analyze hundreds of ‘health variables’ in search of patterns in the data. She could do this with far greater precision than a physician or nutritionist, due to her ability to quickly and tirelessly check all possible combinations. In a relatively short timeframe she could narrow down the factors that are positively and negatively influencing your health, while taking into consideration your pre-existing conditions and sensitivities.”

To see the digital nurse in action, see the video below. It shows how to pin-point the causes of a related, though potentially embarrassing, physiological process: frequent stomach growling.






REFERENCES

  • Wilkinson, D., Nisbet, E., & Ruxton, G. (2012). Could methane produced by sauropod dinosaurs have helped drive Mesozoic climate warmth? Current Biology, 22 (9) DOI: 10.1016/j.cub.2012.03.042 
  • Winham DM, & Hutchins AM (2011). Perceptions of flatulence from bean consumption among adults in 3 feeding studies. Nutrition journal, 10 PMID: 22104320
  • Wynne-Jones, G. (1975) Flatus retention is the major factor in diverticular disease. The Lancet, 306 (7927), 211 - 212, doi:10.1016/S0140-6736(75)90677-7




Saturday, November 12, 2011

Adding red to your diet

We are always happy receiving nice e-mails from users. Here is a recent letter:


Dear Aurametrix,

I would like to share with you some interesting results that really surprised me, even though they're a little embarrassing. 

I've been using Aurametrix now about 2 months but mostly on days when I experience a symptom (2 entries for diarrhea).  So about 20 entries in all, including food, a few feeling good plus these symptoms:

Diarrhea, experienced 1 bout around 2:30 PM PDT on September 18, 2011 

Diarrhea, experienced 1 bout around 3:30 PM PDT on October 30, 2011


I did an analysis on the second day: Diarrhea relative to Feeling Good, 12 hours 
These are the results copied from the tool:


Based on your Aura entries, the following may be contributing to "Diarrhea" in a 12 hour timeframe:
  • Lycopene (when consumed more than 5.9 micrograms, up to 2650.6)
  • Orange or Yellow fruits and veggies (when consumed more than 0.1 foods, up to 1.0)
I looked up lycopene and it's a chemical in orange-colored fruits. It so happens that I ate mango one day and a raw papaya on the other day I experienced the symptoms. I think I will avoid these fruits in the future (I haven't had any since I learned about it from Aurametrix)

You can post this if you want since I think it's worthwhile to let other people know that the tool really works and I don't have symptoms.
Regards,
Aurametrix User :)

Lycopene is a carotenoid, a pigment that gives fruits and vegetables a red color. It is found in some red, pink, orange and yellow fruits and vegetables such as tomatoes (especially skins), watermelons, grapefruits, apricots, papayas, and guavas.

Lycopene is an antioxidant, but in the human body it converts into lycopenoids with the help of carotenoid monooxygenase (CMO) enzymes. Lycopene metabolism depends on the person. It is more efficient in those with more active CMOs, higher testosteron and those not restricting dietary intake.

A number of studies have suggested that a higher intake of lycopene-containing foods decreases the risk of heart disease, prostate cancer, other cancers and infections, even cataracts and asthma. Lycopene is thought to prevent male infertility, osteoporosis, varicose veins and eye disease. Lycopene may also reduce or prevent the side effects of chemotherapy.

What are the potential side effects? In one Mayo Clinic study (Jatoi et al, 2007), the most common side effect for patients who took 15,000 micrograms of lycopene twice per day was diarrhea (41% of patients), followed by nausea (26%), abdominal distension (17%), and flatulence (4%).


The same effects were also observed by IBS sufferers - like this case of massive diarrhea from fresh tomato on a sandwich or this bad gut reaction to tomato sauce. Mangoes and Papayas are usually considered safe for IBS, yet occasional incidents are posted on the web.

So, should you limit your Lycopene intake if Aurametrix indicates it may cause your diarrhea? Take a note about it and keep analyzing your diet. Analyses that start from "Aura entries" examine food combinations and will tell you if there is something that negates the effect. Perhaps there was a day when you ate it and felt OK. You might not remember it, but Aurametrix will.


REFERENCES

Jatoi A, Burch P, Hillman D, Vanyo JM, Dakhil S, Nikcevich D, Rowland K, Morton R, Flynn PJ, Young C, Tan W, & North Central Cancer Treatment Group (2007). A tomato-based, lycopene-containing intervention for androgen-independent prostate cancer: results of a Phase II study from the North Central Cancer Treatment Group. Urology, 69 (2), 289-94 PMID: 17320666.

Kelkel M, Schumacher M, Dicato M, Diederich M. (2011) Antioxidant and anti-proliferative properties of lycopene. Free Radic Res. 2011 Aug;45(8):925-40. Epub 2011 May 26.

Brian L. Lindshield, Kirstie Canene-Adams, John W. Erdman Jr (2007) Lycopenoids: Are lycopene metabolites bioactive? Archives of Biochemistry and Biophysics. Volume 458, Issue 2, Pages 136-140.